Chinese Society: Change, Conflict and Resistance (Routledge, 2010), revised and enlarged 3rd edition. (ed. With Elizabeth Perry)

Japan's Wartime Medical Atrocities: Comparative Inquiries in Science, History, and Ethics (London: Routledge, 2010), (ed. by Jing Bao Nie, Nanyan Guo, Mark Selden, and Arthur Kleinman)

China, East Asia and the Global Economy: Regional and Historical Perspectives (Routledge, 2008; Chinese edition). By Takeshi Hamashita, edited by Mark Selden and Linda Grove

Revolution, Resistance and Reform in Village China (Yale University Press, 2005; (with Edward Friedman and Paul G. Pickowicz)

War and State Terrorism: The United States, Japan and the Asia-Pacific in the Long Twentieth Century (Rowman and Littlefield, 2003) (ed. with Alvin So)

Chinese Society: Change, Conflict and Resistance (Routledge, 2003), revised and enlarged 2nd edition. (ed. With Elizabeth Perry)

Islands of Discontent: Okinawan Responses to Japanese and American Power (Rowman and Littlefield, 2003) (ed. with Laura Hein)

The Resurgence of East Asia: 500, 150 and 50 Year Perspectives (London: Routledge, 2003; Chinese edition 2005) (ed. With Giovanni Arrighi and Takeshi Hamashita)

Bitter Flowers, Sweet Flowers: East Timor, Indonesia and the World Community (Rowman and Littlefield, 2001) (ed. with Richard Tanter and Stephen R. Shalom)

Chinese Society: Change, Conflict and Resistance (Routledge, 2000) (ed. With Elizabeth Perry)

Censoring History: Citizenship and Memory in Japan, Germany and the United States (M.E. Sharpe, 2000) (ed. with Laura Hein)

Living With the Bomb. American and Japanese Cultural Conflicts in the Nuclear Age (M. E. Sharpe, 1997) (ed. with Laura Hein)

China in Revolution. The Yenan Way Revisited (M. E. Sharpe, 1995; Chinese edition, 2002)

Bukharin in Retrospect: The Man and the Revolution (M. E. Sharpe, 1994; German edition, 1992) (ed. with Theodor Bergmann and Gert Schaefer)

Reinventing Vietnamese Socialism: Doi Moi in Comparative Perspective (Westview, 1993) (ed. with William Turley)

The Political Economy of Chinese Development (M. E. Sharpe, 1993; Chinese edition 1992)

Chinese Village, Socialist State (Yale University Press, 1991; Chinese edition, 2002 (with Edward Friedman and Paul Pickowicz)

The Atomic Bomb: Voices From Hiroshima and Nagasaki (M. E. Sharpe, 1989) (ed. with Kyoko Selden)

Remaking the Economic Institutions of Socialism: China and Eastern Europe (Stanford University Press, 1989) (ed. with Victor Nee and David Stark)

The Political Economy of Chinese Socialism (M. E. Sharpe, 1988; Chinese edition 1990)

The Transition to Socialism in China (M. E. Sharpe, 1982) (ed. with Victor Lippit)

The People's Republic of China (Monthly Review Press, 1979; Chinese edition 1982)

Korea North and South (Monthly Review Press, 1978) (ed. with Gavan McCormack; Japanese edition, 1981; Korean edition 1988)

Remaking Asia. Essays on the American Uses of Power (Pantheon, 1974; Japanese edition 1976; introduction by Harry Magdoff)

Open Secret: The Kissinger-Nixon Doctrine in Asia (Harper & Row, 1972, Japanese edition 1973) (ed. with Virginia Brodine; introduction by Noam Chomsky)

America's Asia: Dissenting Essays on Asian-American Relations. (Pantheon, 1971) (ed. with Edward Friedman)

The Yenan Way in Revolutionary China (Harvard University Press, 1971; Japanese edition 1975)